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Can you check on the followiing:
2. If it does not work, check the version on MSXML on the helper server?
Now I am able to run update catalog job successfully but the patch catalog is empty
appserver.log shows the following error
Thread died due to an uncaught exception. Thread = PSU-Thread-1
Chandra, did you get this issue resolved?
ConvertXML on the helper server is unable to parse XML versions of the Shavlik files. One possibility is a bad XML file.
Delete <fileserver>/patch/catalog/catalog_xxx/*.xml files for your respective Windows Catalog
Rerun the Catalog Update Job.