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In the Control-M Server database there is a table called CMS_SCHEDT. The fields are SCHEDTAB (folder name) and DAILYNAME.
DAILYNAME will be blank if the folder is defined as manual order.
If you want a list of jobs with DAILYNAME blank you'll need to join the query with CMS_JOBDEF such as:
SELECT JOBNAME from CMS_JOBDEF, CMS_SCHEDT
where CMS_JOBDEF.SCHEDTAB = CMS_SCHEDT.SCHEDTAB
and CMS_SCHEDT.DAILYNAME = ''
Thanks for your help.