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Yes to all of these (nearly all, at least) but you'll have to check out the 'advanced' settings on the AFT/MFT job definition.
Once you define the job, enter the source and destination details of the file(s) and then click the advanced button. You might be limited to some options depending on the kind of job that you are defining.
1. You don't necessarily need to delete the source file but in the advanced area you'll see an option like "delete source after transfer completed" - click that and the local file will be deleted
2a. Again on the advanced button - select "copy file to new location" and enter the details you require.
2b. You could create a separate file watcher job to do this, or even try to use a post-exec command to get this functionality).
3a/b. This is defined in the job. Again in the advanced area, there are options to specify what to do in the event of a transmission failure. Usually you define it to delete the destination file on failure and leave the source alone.
If the files are big then there's also the "restart from failure", so you don't waste too much when re-running.
4. There are several advanced options to deal with duplicates, my suggestion is that you overwrite the destination file if there's one there already there with the same name.
The advanced options should give you enough scope to cover your needs.