The trace.txt has multiple executions logged. The first one shows MS14-019/KB2922229 installed.
2014-05-01T06:46:16.9693164Z 1eb0 V PatchTest.cpp:528 Testing 'MS14-019'.
2014-05-01T06:46:16.9693164Z 1eb0 V PatchTest.cpp:633 Bulletin 'MS14-019', filecount = 1, regcount = 1.
2014-05-01T06:46:16.9693164Z 1eb0 V PatchTest.cpp:1223 File '\\127.0.0.1\C$\WINDOWS\SYSTEM32\KERNEL32.DLL' error: 0.
2014-05-01T06:46:16.9693164Z 1eb0 V PatchTest.cpp:1226 File \\127.0.0.1\C$\WINDOWS\SYSTEM32\KERNEL32.DLL (5.2.3790.5295) C 2 5.2.3790.5295 (AC 5).
2014-05-01T06:46:16.9693164Z 1eb0 V PatchTest.cpp:659 A file was tested.
2014-05-01T06:46:16.9693164Z 1eb0 V PatchTest.cpp:1418 Key 'SOFTWARE\Microsoft\Windows NT\CurrentVersion\HotFix\KB2922229'.
2014-05-01T06:46:16.9693164Z 1eb0 V PatchTest.cpp:1576 Reg passed.
What happened to that server between 2014-05-01 06:46 and 2014-05-01 06:55:56? According to the next execution, the version of KERNEL32.DLL has gone backwards?
2014-05-01T06:55:56.1638917Z 1578 V PatchTest.cpp:528 Testing 'MS14-019'.
2014-05-01T06:55:56.1638917Z 1578 V PatchTest.cpp:633 Bulletin 'MS14-019', filecount = 1, regcount = 1.
2014-05-01T06:55:56.1638917Z 1578 V PatchTest.cpp:1223 File '\\127.0.0.1\C$\WINDOWS\SYSTEM32\KERNEL32.DLL' error: 0.
2014-05-01T06:55:56.1638917Z 1578 V PatchTest.cpp:1226 File \\127.0.0.1\C$\WINDOWS\SYSTEM32\KERNEL32.DLL (5.2.3790.5069) C 2 5.2.3790.5295 (AC 5).
2014-05-01T06:55:56.1638917Z 1578 V PatchTest.cpp:659 A file was tested.
2014-05-01T06:55:56.1638917Z 1578 V PatchTest.cpp:663 Did not pass file tests.
Can you check the registry for Key 'HKLM\SOFTWARE\Microsoft\Windows NT\CurrentVersion\HotFix\KB2922229'
What do you see if you Browse the serve via the BSA Console and access the Hotfixes? Is MS14-019 present? What is it's status?
The time you see"2014-05-01 06:46" was from Trace.txt which was generated by PAJ & second time which you have mentioned "2014-05-01 06:55:56" was from the other log which was generated by executing BLPatchCheck2 command. I don't understand why it shows different output.
I have checked HKLM\SOFTWARE\Microsoft\Windows NT\CurrentVersion\HotFix & I there is not folder with name KB2922229 & also I don't see that patch is installed when I browse Hotfixes section.
Please run the manual command again, with the -pt 13 argument, and share the results
nexec -e BLPatchCheck2.exe 0 -pt 13 -s hf7b.xml results.xml
And the trace.txt file please.
By the looks of it, the MS14-019 bulletin should show as missing in the result of the PAJ.
But I am still concerned about what happened to the version of KERNEL32.DLL between those first two executions
It really looks like something happened on the target server in between the two runs.
You should open a support issue to get this looked into in more detail.