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I thought about this a little bit more and working through it, it appears only the Normalization job is affected by the missing files.
<thought some more...>
I opened up the runNEJob.bat file that was in the 9.0 .zip file and it occurred to me there really wasn't any magic happening. It is just calling a java process and outputting to a log file. I thought "hey, I recognize those .jar files" and realized they are already in the CMDB install.
I copied the current versions of the files listed in the 9.0 batch file (i.e. cmdbapi91.jar, arapi91_build009.jar, etc.) to the netrigger directory and saved a new copy of the batch with updated .jar references. The only "code" file I needed from the 9.0 zip that wasn't already in the install was TestBatch.class.
I called an NE job via the new batch file and can see the run in the CMDB Portal under history. I think I am good to go.
It would still be really, really nice for the documentation to link to valid downloads.